PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000032.1_g00024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 212aa    MW: 23629.2 Da    PI: 4.791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000032.1_g00024.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1870120356
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr+++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g+
  Itr_sc000032.1_g00024.1  70 YRGVRRRP-WGKFAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFAMRGA 120
                              9*******.**********44465..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-1369119IPR001471AP2/ERF domain
SMARTSM003801.0E-3569133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3069128IPR001471AP2/ERF domain
PROSITE profilePS5103223.1369127IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2270129IPR016177DNA-binding domain
PRINTSPR003674.2E-107081IPR001471AP2/ERF domain
CDDcd000184.00E-1470104No hitNo description
PRINTSPR003674.2E-1093109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDSWASSFSP ESSSWDFRSF DDSLPFNLND SEEMLLFGVL EQAAAEENSD DTNSSDSVKT  60
EAETAAERSY RGVRRRPWGK FAAEIRDSTR NGIRVWLGTF DSAEAAALAY DQAAFAMRGA  120
AAILNFPVER VRESLKEMRC QVEEGCSPVV ALKRRHSMRK RRSSSAGRKS GKVVVGDVKV  180
VENVVVFEDL GADYLEQLLS SSSEIMTPNH QW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-2765128164ATERF1
2gcc_A4e-2765128164ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162MRKRRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356112.12e-80PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqNP_001234818.13e-80ethylene responsive element binding protein
SwissprotQ8LDC81e-74ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLQ8GZE92e-85Q8GZE9_SOLLC; Ethylene responsive element binding protein
STRINGSolyc09g089930.1.11e-79(Solanum lycopersicum)
STRINGPGSC0003DMT4000348738e-80(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-48ethylene response factor 1